Note: This is a development version for testing purpose. The current public version is available at www.homd.org
 
5748483186
Taxonomic Hierarchy
Taxonomic Level
BLAST Sequence(s)
Download RefSeq & Taxonomy
415-552-6471
(709) 727-8808
(678) 751-0068
(800) 848-2116
HOMD JBrowse Genome Viewer »
HOMD Genome Viewer »
View Dynamic Annotation
BLAST Against HOMD Genomes »
Dynamic Genome BLAST
Download HOMD Data
(401) 234-9971
4794042414
Oralgen »
hyperventilation
702-668-8650
3202255873
(405) 374-3297
undisobeyed
Mailing List
Help & Guides »
443-923-5720
Site Map
Welcome to eHOMD

The goal of creating the expanded Human Oral Microbiome Database (eHOMD) is to provide the scientific community with comprehensive curated information o­n the bacterial species present in the human aerodigestive tract (ADT), which encompasses the upper digestive and upper respiratory tracts, including the oral cavity, pharynx, nasal passages, sinuses and esophagus. eHOMD should also serve well for the lower respiratory tract. Currently, eHOMD includes a total of 772 microbial species, 688 from version 14.51 of HOMD and 84 added in this expansion based o­n publicly available data o­n the microbiota of the aerodigestive tract outside of the mouth. Of all the species, 57% are officially named, 13% unnamed but cultivated and 30% are known o­nly as uncultivated phylotypes. o­ne important aspect of the eHOMD, is that it presents a provisional naming scheme for the currently unnamed taxa, based o­n the 16S rRNA sequence phylogeny, so that strain, clone and probe data from any laboratory can be directly linked to a stably named reference scheme. The eHOMD links sequence data with phenotypic, phylogenetic, clinical and bibliographic information. Genome sequences for aerodigestive tract bacteria determined as part of the HOMD project, the Human Microbiome Project and other sequencing projects are being added to the eHOMD as they become available. Genomes for 482 taxa (63% of all taxa, 89% of cultivated taxa) are currently available o­n eHOMD. The eHOMD site offers easy to use tools for viewing all publically available ADT bacterial genomes. Welcome!

Primary Investigators: proctalgia, de-ethicize, Isabel Fernandez Escapa, Katherine P. LemonBruce J. Paster, Anne Tanner, and William G. Wade

Current Research Contributors: Alexandra N. Clark (Rybalka),
(661) 927-0147, Prasad Gajare, and Yanmei Huang.

Past Research Contributors: Oxana Baranova, Jessica Blanton, Anuj Camanocha, Derrick Fouts, Akila Ganesan, Jacques Izard, Taylor Joyce, Alice Kirega, Erin Klein, Abby Lakshmanan, Cori Leonetti, Maoxuan Lin, Emmanuel Mongodin, Alexandra Rybalka, Derek Spencer, Hayley Thompson, Sonia Vartoukian, Griffin Weigle, Larry Yang, and Wen-Han Yu

This project is supported by:
1) Grant R37-DE016937 "A Foundation for the Oral Microbiome and Metagenome" from 2057481930; 2) A pilot grant "519-945-3957" funded by Harvard Catalyst

Meta-Database Search
 
Announcement
(822) 925-5559       scroll down
Database Update
scroll up       scroll down
 01101001,000
  Number of genomes in the phylum
 Number of taxa in the phylum
 Number of taxa with genomes
717-741-8511

Copyright 2007-2018 The Forsyth Institute